BioMinE Products
BioMinE Publications

This page provides an overview of publications from members of the BioMinE consortium. The presented work has been carried out in the framework of BioMinE. 

2007
 

2007

Biotekniikan voimin kohti kestävämpää metallituotantoa (EU project leading to more sustainable metal production with the help of biotechnology).
Tuomas van der Meer, Anna Kaksonen, Bestamin Özkaya, Jaakko Puhakka ja Jaakko Leppinen. EU-hanke vie
Kemia-Kemi. In press, publishing date 8.10.2007
(via http://www.kemia-lehti.fi)
Mineral and Iron Oxidation at Low Temperatures by Pure and Mixed Cultures of Acidophilic Microorganisms
Dopson M, A-K Halinen, N Rahunen, B Özkaya, E Sahinkaya, AH Kaksonen, EB Lindström & JA Puhakka
Biotechnol Bioengin 97: 1205-1215, 2007
(via http://www3.interscience.wiley.com)
Reassessment of the phylogenetic relationships of Thiomonas cuprina.
D.P. Kelly, Y. Uchino, H. Huber, R. Amils, A.P. Wood
Internt. J. System Microbiol., in press
(via http://www.ncbi.nlm.nih.gov)
Desulfurispora thermophila gen. nov., sp. nov., a thermophilic spore-forming sulfate-reducer isolated from a sulfidogenic fluidized-bed reactor
Kaksonen AH, Spring S, Schumann P, Kroppenstedt RM and Puhakka JA.
International Journal of Systematic and Evolutionary Microbiology 57: 1089-1094, 2007
(via http://www.ncbi.nlm.nih.gov)

Neural network prediction of thermophilic (65 °C) sulfidogenic fluidized-bed reactor performance for the treatment of metal-containing wastewater
Sahinkaya E, Özkaya B, Kaksonen AH, Puhakka JA.
Biotechnology and Bioengineering 97 (4): 780-787, 2007
(via http://www3.interscience.wiley.com)

BioMinE - Biotechnology for Metal bearing materials in Europe Work progress after two years
D. Morin , T. Pinches, J. Huisman, C. Frias, A. Norberg, E. Forssberg
Advance Materials research Vols. 20-24 (2007) pp13-19
(via www.scientific.net)
Arsenite oxidation by a moderate acidophile, Thiomonas sp.
Djamila Slyemi, Katia Duquesne, Aurélie Lieutaud, Jeanine Ratouchniak and Violaine Bonnefoy
XXIX Congreso Chileno de Microbiología. December 3th to 5th, 2007, Viña del Mar, Chile.

Leaching behaviour of industrial oxidic by-products: Possibilities to use as neutralisation agent in bioleaching
M.L. Cunha, C.S. Gahan, N. Menad and Å. Sandström
Proceedings of XIII Conference of SPM & IV International Materials Symposium
A Materials Science Forum, Materiais 2007, Porto, Portugal, 1–4 April p. 84, ISBN 978-972-8953-15-7.

Related arsenic resistance transposons occur in Leptospirilli isolated from different continents
Kloppers, A., Deane, S.M and Rawlings, D.E.
Advanced Materials Research 20-21:417-422.
Oral presentation International Biohydrometallurgy Symposium, DECHEMA, Frankfurt, 5 September 2007
(via http://www.scientific.net)
Regulation of a novel Acidithiobacillus caldus gene cluster involved in reduced inorganic sulfur compound metabolism
Olena I. Rzhepishevska, Jorge Valdés, Liucija Marcinkeviciene, Camelia Algora Gallardo, Rolandas Meskys, Violaine Bonnefoy, David S. Holmes and Mark Dopson.
Appl. Environ. Microbiol. (2007) in press
(via http://aem.asm.org)
Differential expression of two bc1 complexes in the strict acidophilic chemolithoautotrophic bacterium Acidithiobacillus ferrooxidans suggests a model for their respective roles in iron or sulfur oxidation
Bruscella P., C. Appia-Ayme, G. Levican, J. Ratouchniak, E. Jedlicki, D. Holmes, et V. Bonnefoy
Microbiology 153: 102-110, 2007
(via http://mic.sgmjournals.org)
Ferrous Iron- and sulfur-induced genes in Sulfolobus metallicus
Bathe, S. and Norris, P.R.
Applied and Environmental Microbiology 73, 2491-2497. 2007
(via http://aem.asm.org)
Techniques for Detecting and Identifying Acidophilic Mineral-Oxidizing Microorganisms
D. Johnson and Kevin Hallberg
BioMining
ISBN : 978-3-540-34909-9 (Print) 978-3-540-34911-2 (Online) - pp 237-261
(via http://www.springerlink.com)
Effect of temperature on bioleaching of chalcopyrite concentrates containing high concentrations of silver: opposite rules apply
L. Yajie, N. Okibe, and D. B. Johnson
Advanced Materials Research Vols. 20-21:168-169
(via http://www.scipress.com)
Concentrate mineralogy dictates the composition of bioleaching microbial consortia
D. B. Johnson, L. Yajie, N. Okibe, K. Coupland, and K. B. Hallberg
Advanced Materials Research Vols. 20-21: 403-404
(via http://www.scientific.net)
Controlled low-strength materials containing waste precipitates from mineral processing
S. Bouzalakos, A.W.L. Dudeney & C. R. Cheeseman
Minerals Engineering
(via http://www.sciencedirect.com)

Possibilities to use oxidic by-products for precipitation of Fe/As from leaching solutions for subsequent base metal recovery
M.L. Cunha, C.S. Gahan, N. Menad, Å. Sandström,
In Press, Minerals Engineering (Proceedings of Bio & Hydrometallurgy 07)
(via http://www.sciencedirect.com)

Prokaryotic community composition and ecology of floating macroscopic filaments from an extreme acidic environment, Río Tinto (SW, Spain)
A. García-Moyano, E. González-Toril, A. Aguilera, R. Amils
System. Appl. Microbiol., 30: 601-614.
(via http://www.sciencedirect.com)

Biodegradation of organic compounds contained in lead-bearing materials
Wesołowska K., Chmielarz A., Fijałkowska A., Czaplicka M.
First International "Biotechnology in Agriculture" Conference EUROBIOTECH, Kraków, Poland, abstract, Acta Biochimica Vol 54 , 25-27.04. 2007
(via http://www.actabp.pl)
Application of sulfate reduction to the biological conversion of anglesite to galena
A. Wolthoorn, S. Kuitert, H. Dijkman and J. L. Huisman
Advanced Materials Research Vols. 20-21 (2007) pp 197-200
(via http://www.rials-science.ttp.net)

Characterization, morphology and composition of biofilm and precipitates from a sulphate-reducing fixed-bed reactor
E. Remoundaki, et al.
J. Hazard. Mater. (2007), doi:10.1016/j.jhazmat.2007.08.094.
(via http://www.sciencedirect.com)

 

Proceedings of the 17th International Biohydrometallurgy Symposium IBS
02-05 September, 2007 - Frankfurt, Germany
(Editors: Schippers et al. )
Biohydrometallurgy: from the single cell to the environment, Trans Tech Publications, Stafa-Zurich, ISSN 1022-6680

  Biological transformation of kimberlite ores
M Gericke, B Benvie, L Krüger
Advanced Materials Research, Vol 20-21, pp 75-78
(via http://www.scientific.net)
  Effect of temperature on bioleaching of chalcopyrite concentrates containing high concentrations of silver :opposite rules apply
Liu Yajie, Naoko Okibe and D. Barrie Johnson
Advanced Materials Research Vols. 20-21 (2007) pp 168-169
(via http://www.scientific.net)
  Combined test for bioleaching activities
Rohwerder & Sand
p. 171-171
(via http://www.scientific.net)
 

A study of the operating parameters of a sulphate-reducing fixed-bed reactor for the treatment of metal-bearing wastewater

Poster version
Kousi P., Remoudaki E., Hatzikioseyian A. and Tsezos M.
Advanced Materials Research, vol.20-21, pp.230-234, 2007
(via http://www.scientific.net)

  Investigations on the sorting of very fine particles by Biocoagulation
Halit Z. Kuyumcu, Pinka, J, Bielig, T.
Advanced Materials Research, vol.20-21, pp.337-340, 2007
(via http://www.ttp.ch)
  Selective coagulation in chalcopyrite/pyrite mineral system using Acidithiobacillus group bacteria
A. Vilinska, K. Hanumantha Rao, K.S.E. Forssberg
Advanced Materials Research, Vols. 20-21, 2007, pp. 366-370
(via http://www.scientific.net)
  Combined atomic force and fluorescence microscopy of biofilms formed by leaching bacteria on opaque substrata
Mangold et al.
p. 371-374
(via http://www.scientific.net)
  Influence of growth substrate and attachment substratum on EPS and biofilm formation by Acidithiobacillus ferrooxidans A2
Harneit & Sand,
p. 385-385
(via http://www.scientific.net)
  Study of the attachment behaviour of different strains of Acidithiobacillus spp. to pyrite
Mafanya et al.
p. 386-386
(via http://www.scientific.net)
  Concentrate mineralogy dictates the composition of bioleaching microbial consortia
D. Barrie Johnson1,a, Liu Yajie2,b, Naoko Okibe3,c, Kris Coupland1,d and
Kevin B. Hallberg
Advanced Materials Research Vols. 20-21 (2007) pp 403-404
(via http://www.scientific.net)
  Elemental sulfur oxidation in Acidiphilium spp.
Rohwerder et al.
p. 583-583
(via http://www.scientific.net)
 

Temperature effects on the iron oxidation kinetics of a Leptospirillum ferriphilum dominated culture at pH below one
Özkaya B, Nurmi P, Sahinkaya E, Kaksonen AH, Puhakka JA.
Poster presentation
Advanced Materials Research 20-21:465-468. 2007

   
Combined atomic force and fluorescence microscopy of bioleaching/biocorrosion biofilms
Mangold et al.
Proceeding of 6th International JPK Workshop 2007, October 9th in Berlin
(via http://www.spm-workshop.jpk.com)
Solutions in Practice for Removal of Selenium and Molybdenum
J. Weijma, A.Wolthoorn, J. Huisman
Proceedings of EMC June 12th, 2007
Sustainability in Minineral Industry through the application of Biotechnology
Angelatou V.
International Symposium on Sustainable Development in Mineral Industry 17-20 June 2007, Milos island, Greece
(PPT file via www.sdimi.org)
Biologische Laugung zur Gewinnung von Wertmetallen
Rohwerder,
Metall 61(11): 702-704. 2007
(via http://cat.inist.fr)
Oxidation of inorganic sulfur compounds in acidophilic prokaryotes
Rohwerder & Sand
Eng. Life Sci. 7(4): 301-309. 2007
(via http://www3.interscience.wiley.com)
Sulfate Reduction Based Bioprocesses for the Treatment of Acid Mine Drainage
and the Recovery of Metals

Kaksonen AH and Puhakka JA.
Engineering in Life Sciences 7 (6): 541-564. 2007
(via http://www3.interscience.wiley.com)

Effect of fluidized-bed carrier material on biological ferric sulphate generation
Van der Meer T, Kinnunen PH-M, Kaksonen AH, Puhakka JA
Minerals Engineering 20 (8): 782-792. 2007
(via http://www.sciencedirect.com)

Kinetics of iron oxidation by Leptospirillum ferriphilum dominated culture at pH below one
Ozkaya B, Sahinkaya E, Nurmi P, Kaksonen AH, Puhakka JA.
Biotechnology and Bioengineering 97: 1121-1127. 2007
(via http://www3.interscience.wiley.com)
Desulfurispora thermophila gen. nov., sp. nov., a thermophilic spore-forming sulfate-reducer isolated from a sulfidogenic fluidized-bed reactor
Kaksonen AH, Spring S, Schumann P, Kroppenstedt RM and Puhakka JA.
International Journal of Systematic and Evolutionary Microbiology 57: 1089-1094. 2007
(via http://js.sgmjournals.org)
High-rate sulfidogenic fluidized-bed treatment of metal-containing wastewater at high temperature
Sahinkaya E, Özkaya B, Kaksonen AH, Puhakka JA.
Water Science and Technology 55: 269-275. 2007
(via http://www.iwaponline.com)
Sulfidogenic fluidized-bed treatment of metal-containing wastewater at 8°C and 65°C temperature is limited by acetate oxidation
Sahinkaya E, Ozkaya B, Kaksonen AH, Puhakka JA.
Water Research 41: 2706-2714. 2007
(via http://www.sciencedirect.com)
Sulfidogenic fluidized-bed treatment of metal-containing wastewater at low and high temperatures
Sahinkaya E, Özkaya B, Kaksonen AH and Puhakka JA.
Biotechnology and Bioengineering 96: 1064-1072. 2007
(via http://www3.interscience.wiley.com)
Continuous bioleaching of a cobaltiferrous pyrite in stirred reactors: population dynamics and EPS production vs. bioleaching performances
P. d’Hugues, C. Joulian, P. Spolaore, C. Michel, F. Garrido, D. Morin
Advanced Materials Research Vols. 20-21 (2007) pp. 62-65
Bacterial oxidation of ferrous iron at low temperatures 
Daniel Kupka, Olena I. Rzhepishevska, Mark Dopson, E. Börje Lindström, Olia V. Karnachuk, Olli H. Tuovinen
In press (2007) Biotechnology and Bioengineering
(via www3.interscience.wiley.com)
Desulfovirgula thermocuniculi gen. nov., sp. nov., a thermophilic sulfate-reducer isolated from a geothermal underground mine in Japan 
Anna H. Kaksonen, Stefan Spring, Peter Schumann, Reiner M. Kroppenstedt and Jaakko A. Puhakka; 
Int J Syst Evol Microbiol 57 (2007), 98-102
(via http://ijs.sgmjournals.org)
Attachment of acidophilic bacteria to solid surfaces: The significance of species and strain variations
M. Afzal Ghauri, Naoko Okibe, D. Barrie Johnson
Hydrometallurgy 85 (2007) 72-80
(via www.sciencedirect.com)
The microbiology of biomining: development and optimization of mineral-oxidizing microbial consortia
Douglas E. Rawlings and D. Barrie Johnson
Microbiology (2007), 153, 315-324
(via http://mic.sgmjournals.org)
2007
Hosted by: BRGM - 3, avenue Claude Guillemin - BP 36009 - 45060 Orléans cedex 2 - France